Is there a way to fix this, and possibly add a method of converting to numbered sections? Especially the first one is an absolute dealbreaker right now, but judging from other people's screenshots I might be encountering a bug or I am doing some stupid mistake I am not aware of. I am running Win10, tested for word, pdf and html output respectively. Aside from the fact that numbering doesn't seem to be possible (both automatic and in-header manual numbering, surprisingly, don't show up so far), the subsections of "Methods" are not listed beneath and indented to each other as they would be in a normal toc. I tested it on a friend's computer, and got some weird results. WARNING: This function only works with hash-tag headers. Returns a markdown list with links to the headers using pandoc header identifiers. However this would be a great addition to get rid of the pesky standard TOC. A simple function to extract headers from an RMarkdown or Markdown document and build a table of contents. I can't test anything right now because my system is bricked, and this is beyond my capabilities anyways. Is there a way to enable automatic chapter numbering comparable to the suboption 'numbered_section=true' in the normal toc-command of the yaml-header? Instead of having a bullet-point list as the TOC, maybe is it possible to recreate this with a numbered list instead? Note that the ` echo = FALSE ` parameter was added to the code chunk to prevent printing of the R code that generated the plot. If ( ! start_at_base_level & level = 0) start_at_base_level <<- TRUE #' `toc_depth = 3`, which results in a TOC of at most 3 levels. #' toc_depth Maximum depth for TOC, relative to base_level. but the toc does not appear in the md: r-markdown. I am on R version 3.5.2 and following the documentation I have: - title: 'test' output: githubdocument: toc: true - header 1 header 2 header 3. #' prior to the first header at the base_level are dropped silently. I am trying to add a table of contents to my rmd githubdocument, however I cannot get this to work. #' base_level Starting level of the lowest header level. #' include the TOC itself in the TOC (but why?). Is it possible to add a table of contents to an R notebook or do I have to make this into a. #' header with this format will not be included in the TOC. There doesnt seem to be a problem when I add a table of contents to an r markdown file but nothing happens when I add this to an r notebook: output: htmldocument: htmlnotebook: toc: true depth: 3 theme: united. #' toc_header_name The table of contents header name. #' filename Name of RMarkdown or Markdown document #' Just drop in a chunk where you want the toc to appear (set `echo=FALSE`): #' `toc_header_name` to exclude the table of contents header from the TOC, or #' Table of Contents itself must be manually included in the text. #' Because this function returns only the markdown list, the header for the #' WARNING: This function only works with hash-tag headers. Returns a markdown list with links to the If you are using pdfdocument, you might want to add table of contents in a new page, which toc: true does not allow. #' A simple function to extract headers from an RMarkdown or Markdown document
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